IL_3JBU_001

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGAA*UUA

Length

7 nucleotides

Bulged bases

3JBU|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_001 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2594

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

3JBU|1|A|U|30
3JBU|1|A|G|31
3JBU|1|A|A|32
3JBU|1|A|A|33
*
3JBU|1|A|U|551
3JBU|1|A|U|552
3JBU|1|A|A|553

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12