IL_3JBU_020

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UAAG*CUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_020 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.249

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

3JBU|1|A|U|594
3JBU|1|A|A|595
3JBU|1|A|A|596
3JBU|1|A|G|597
*
3JBU|1|A|C|643
3JBU|1|A|U|644
3JBU|1|A|G|645

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17