IL_3JBU_042

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_042 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1602

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3JBU|1|A|C|1303
3JBU|1|A|G|1304
3JBU|1|A|G|1305
3JBU|1|A|A|1306
3JBU|1|A|U|1307
3JBU|1|A|U|1308
*
3JBU|1|A|A|1329
3JBU|1|A|U|1330
3JBU|1|A|G|1331
3JBU|1|A|A|1332
3JBU|1|A|A|1333
3JBU|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13