IL_3JBU_102

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

3JBU|1|b|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_102 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.2117

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

3JBU|1|b|G|1432
3JBU|1|b|A|1433
3JBU|1|b|A|1434
3JBU|1|b|G|1435
*
3JBU|1|b|C|1557
3JBU|1|b|C|1558
3JBU|1|b|U|1559
3JBU|1|b|G|1560
3JBU|1|b|C|1561

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2