IL_3JBU_103

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

3JBU|1|b|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_103 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1744

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3JBU|1|b|C|1437
3JBU|1|b|U|1438
3JBU|1|b|A|1439
3JBU|1|b|U|1440
*
3JBU|1|b|A|1551
3JBU|1|b|A|1552
3JBU|1|b|A|1553
3JBU|1|b|U|1554
3JBU|1|b|G|1555

Current chains

Chain b

23S rRNA

Nearby chains