IL_3JBU_127

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

3JBU|1|b|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_127 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.117

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3JBU|1|b|U|2081
3JBU|1|b|A|2082
3JBU|1|b|G|2083
*
3JBU|1|b|U|2236
3JBU|1|b|G|2237
3JBU|1|b|G|2238
3JBU|1|b|G|2239

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain c

50S ribosomal protein L2