IL_3JBU_141

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GCUC*GCGAGC

Length

10 nucleotides

Bulged bases

3JBU|1|b|G|2576, 3JBU|1|b|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_141 not in the Motif Atlas

Geometric match to IL_3MEI_004

Geometric discrepancy: 0.3368

The information below is about IL_3MEI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

3JBU|1|b|G|2509
3JBU|1|b|C|2510
3JBU|1|b|U|2511
3JBU|1|b|C|2512
*
3JBU|1|b|G|2574
3JBU|1|b|C|2575
3JBU|1|b|G|2576
3JBU|1|b|A|2577
3JBU|1|b|G|2578
3JBU|1|b|C|2579

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain d

50S ribosomal protein L3

Chain z

SecM-glycine