IL_3JBU_191

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_191 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.1365

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|G|1666
3JBU|1|b|G|1667
3JBU|1|b|A|1668
3JBU|1|b|A|1669
3JBU|1|b|C|1670
3JBU|1|b|U|1671
3JBU|1|b|A|1672
3JBU|1|b|G|1673
3JBU|1|b|G|1674
*
3JBU|1|b|C|1990
3JBU|1|b|U|1991
3JBU|1|b|G|1992
3JBU|1|b|U|1993
3JBU|1|b|C|1994

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

50S ribosomal protein L14