IL_3JBU_206

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_206 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.2766

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

3JBU|1|A|U|409
3JBU|1|A|G|410
3JBU|1|A|A|411
3JBU|1|A|A|412
3JBU|1|A|G|413
3JBU|1|A|A|414
3JBU|1|A|A|415
3JBU|1|A|G|416
*
3JBU|1|A|U|427
3JBU|1|A|G|428
3JBU|1|A|U|429
3JBU|1|A|A|430
3JBU|1|A|A|431
3JBU|1|A|A|432
3JBU|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4