3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GG*UCAUC
Length
7 nucleotides
Bulged bases
3JBU|1|A|C|1200, 3JBU|1|A|A|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JBU_212 not in the Motif Atlas
Homologous match to IL_4LFB_045
Geometric discrepancy: 0.1854
The information below is about IL_4LFB_045
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

3JBU|1|A|G|1057
3JBU|1|A|G|1058
*
3JBU|1|A|U|1199
3JBU|1|A|C|1200
3JBU|1|A|A|1201
3JBU|1|A|U|1202
3JBU|1|A|C|1203

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.229 s