IL_3JBV_042

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UCC*GAGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_042 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3024

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

3JBV|1|A|U|997
3JBV|1|A|C|998
3JBV|1|A|C|999
*
3JBV|1|A|G|1041
3JBV|1|A|A|1042
3JBV|1|A|G|1043
3JBV|1|A|A|1044

Current chains

Chain A

RNA (1530-MER)

Nearby chains