IL_3JBV_054

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3JBV|1|A|C|1400, 3JBV|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_054 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.103

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

3JBV|1|A|C|1399
3JBV|1|A|C|1400
3JBV|1|A|G|1401
*
3JBV|1|A|C|1501
3JBV|1|A|A|1502
3JBV|1|A|A|1503
3JBV|1|A|G|1504

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain W

Transfer RNA; tRNA

Chain X

RNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3')