IL_3JBV_055

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_055 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1514

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JBV|1|A|G|1401
3JBV|1|A|C|1402
3JBV|1|A|C|1403
3JBV|1|A|C|1404
*
3JBV|1|A|G|1497
3JBV|1|A|U|1498
3JBV|1|A|A|1499
3JBV|1|A|A|1500
3JBV|1|A|C|1501

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain W

Transfer RNA; tRNA

Chain X

RNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3')

Chain b

Large subunit ribosomal RNA; LSU rRNA