IL_3JBV_077

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_077 not in the Motif Atlas

Geometric match to IL_4WF9_014

Geometric discrepancy: 0.2124

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

3JBV|1|b|U|293
3JBV|1|b|A|294
3JBV|1|b|G|295
*
3JBV|1|b|C|343
3JBV|1|b|A|344
3JBV|1|b|A|345
3JBV|1|b|A|346
3JBV|1|b|A|347

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain u

50S ribosomal protein L24