IL_3JBV_078
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 3JBV|1|b|A|504, 3JBV|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBV_078 not in the Motif Atlas
- Homologous match to IL_4WF9_015
- Geometric discrepancy: 0.141
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
3JBV|1|b|G|481
3JBV|1|b|A|482
3JBV|1|b|A|483
3JBV|1|b|C|484
*
3JBV|1|b|G|496
3JBV|1|b|A|497
3JBV|1|b|G|498
3JBV|1|b|U|499
3JBV|1|b|G|500
3JBV|1|b|A|501
3JBV|1|b|A|502
3JBV|1|b|A|503
3JBV|1|b|A|504
3JBV|1|b|A|505
3JBV|1|b|G|506
3JBV|1|b|A|507
3JBV|1|b|A|508
3JBV|1|b|C|509
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain s
- 50S ribosomal protein L22
- Chain u
- 50S ribosomal protein L24
- Chain z
- Secretion monitor
Coloring options: