IL_3JBV_104

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

3JBV|1|b|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_104 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1366

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

3JBV|1|b|C|1196
3JBV|1|b|G|1197
3JBV|1|b|U|1198
*
3JBV|1|b|A|1247
3JBV|1|b|G|1248
3JBV|1|b|U|1249
3JBV|1|b|G|1250

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain e

50S ribosomal protein L3

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20