IL_3JBV_106

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3JBV|1|b|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_106 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1814

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

3JBV|1|b|C|1208
3JBV|1|b|U|1209
3JBV|1|b|G|1210
3JBV|1|b|C|1211
3JBV|1|b|G|1212
3JBV|1|b|A|1213
3JBV|1|b|A|1214
3JBV|1|b|G|1215
*
3JBV|1|b|U|1234
3JBV|1|b|G|1235
3JBV|1|b|G|1236
3JBV|1|b|A|1237
3JBV|1|b|G|1238

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain q

50S ribosomal protein L20