IL_3JBV_114

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

3JBV|1|b|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_114 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.2116

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

3JBV|1|b|G|1432
3JBV|1|b|A|1433
3JBV|1|b|A|1434
3JBV|1|b|G|1435
*
3JBV|1|b|C|1557
3JBV|1|b|C|1558
3JBV|1|b|U|1559
3JBV|1|b|G|1560
3JBV|1|b|C|1561

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain c

50S ribosomal protein L2