IL_3JBV_115

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_115 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1949

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3JBV|1|b|C|1437
3JBV|1|b|U|1438
3JBV|1|b|A|1439
3JBV|1|b|U|1440
*
3JBV|1|b|A|1551
3JBV|1|b|A|1552
3JBV|1|b|A|1553
3JBV|1|b|U|1554
3JBV|1|b|G|1555

Current chains

Chain b

RNA (2903-MER)

Nearby chains