IL_3JBV_116

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

3JBV|1|b|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_116 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2031

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3JBV|1|b|U|1468
3JBV|1|b|A|1469
3JBV|1|b|A|1470
3JBV|1|b|G|1471
*
3JBV|1|b|U|1520
3JBV|1|b|G|1521
3JBV|1|b|A|1522
3JBV|1|b|U|1523
3JBV|1|b|G|1524

Current chains

Chain b

RNA (2903-MER)

Nearby chains