IL_3JBV_127

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_127 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1967

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

3JBV|1|b|U|1720
3JBV|1|b|G|1721
3JBV|1|b|A|1722
3JBV|1|b|G|1723
3JBV|1|b|G|1724
*
3JBV|1|b|U|1736
3JBV|1|b|G|1737
3JBV|1|b|G|1738
3JBV|1|b|A|1739
3JBV|1|b|G|1740

Current chains

Chain b

RNA (2903-MER)

Nearby chains