IL_3JBV_138

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

3JBV|1|b|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_138 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1611

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

3JBV|1|b|A|2070
3JBV|1|b|A|2071
*
3JBV|1|b|U|2438
3JBV|1|b|A|2439
3JBV|1|b|C|2440
3JBV|1|b|U|2441

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain V

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2

Chain z

Secretion monitor