IL_3JBV_156

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GAACG*CAGUUC

Length

11 nucleotides

Bulged bases

3JBV|1|b|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_156 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3944

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

3JBV|1|b|G|2588
3JBV|1|b|A|2589
3JBV|1|b|A|2590
3JBV|1|b|C|2591
3JBV|1|b|G|2592
*
3JBV|1|b|C|2601
3JBV|1|b|A|2602
3JBV|1|b|G|2603
3JBV|1|b|U|2604
3JBV|1|b|U|2605
3JBV|1|b|C|2606

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain V

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2