IL_3JBV_158

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_158 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.2189

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JBV|1|b|C|2652
3JBV|1|b|U|2653
3JBV|1|b|A|2654
3JBV|1|b|G|2655
3JBV|1|b|U|2656
3JBV|1|b|A|2657
3JBV|1|b|C|2658
*
3JBV|1|b|G|2663
3JBV|1|b|G|2664
3JBV|1|b|A|2665
3JBV|1|b|C|2666
3JBV|1|b|C|2667
3JBV|1|b|G|2668

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain g

50S ribosomal protein L5