IL_3JBV_168

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GCAG*CAUGC

Length

9 nucleotides

Bulged bases

3JBV|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_168 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.292

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JBV|1|A|G|42
3JBV|1|A|C|43
3JBV|1|A|A|44
3JBV|1|A|G|45
*
3JBV|1|A|C|396
3JBV|1|A|A|397
3JBV|1|A|U|398
3JBV|1|A|G|399
3JBV|1|A|C|400

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16