IL_3JBV_178

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GAG*CUGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_178 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3162

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

3JBV|1|A|G|654
3JBV|1|A|A|655
3JBV|1|A|G|656
*
3JBV|1|A|C|750
3JBV|1|A|U|751
3JBV|1|A|G|752
3JBV|1|A|A|753
3JBV|1|A|C|754

Current chains

Chain A

RNA (1530-MER)

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15