IL_3JBV_189

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GCGC*GUAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_189 not in the Motif Atlas

Homologous match to IL_7A0S_102

Geometric discrepancy: 0.2653

The information below is about IL_7A0S_102

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform with intercalation

Motif group

IL_58502.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

3JBV|1|a|G|16
3JBV|1|a|C|17
3JBV|1|a|G|18
3JBV|1|a|C|19
*
3JBV|1|a|G|64
3JBV|1|a|U|65
3JBV|1|a|A|66
3JBV|1|a|G|67
3JBV|1|a|C|68

Current chains

Chain a

RNA (118-MER)

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA