IL_3JBV_193

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UUUC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_193 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2427

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JBV|1|b|U|870
3JBV|1|b|U|871
3JBV|1|b|U|872
3JBV|1|b|C|873
*
3JBV|1|b|G|904
3JBV|1|b|A|905
3JBV|1|b|U|906
3JBV|1|b|G|907

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain V

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16