IL_3JBV_204

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_204 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.1196

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

3JBV|1|b|G|1666
3JBV|1|b|G|1667
3JBV|1|b|A|1668
3JBV|1|b|A|1669
3JBV|1|b|C|1670
3JBV|1|b|U|1671
3JBV|1|b|A|1672
3JBV|1|b|G|1673
3JBV|1|b|G|1674
*
3JBV|1|b|C|1990
3JBV|1|b|U|1991
3JBV|1|b|G|1992
3JBV|1|b|U|1993
3JBV|1|b|C|1994

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L11

Chain k

50S ribosomal protein L14