IL_3JBV_207

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GUUAG*CGAAGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_207 not in the Motif Atlas

Geometric match to IL_8C3A_401

Geometric discrepancy: 0.3901

The information below is about IL_8C3A_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3JBV|1|b|G|1863
3JBV|1|b|U|1864
3JBV|1|b|U|1865
3JBV|1|b|A|1866
3JBV|1|b|G|1867
*
3JBV|1|b|C|1874
3JBV|1|b|G|1875
3JBV|1|b|A|1876
3JBV|1|b|A|1877
3JBV|1|b|G|1878
3JBV|1|b|C|1879

Current chains

Chain b

RNA (2903-MER)

Nearby chains