IL_3JCD_096

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

3JCD|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_096 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1331

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3JCD|1|A|C|2636
3JCD|1|A|U|2637
3JCD|1|A|G|2638
3JCD|1|A|A|2639
3JCD|1|A|G|2640
*
3JCD|1|A|C|2774
3JCD|1|A|G|2775
3JCD|1|A|A|2776
3JCD|1|A|G|2777
3JCD|1|A|A|2778
3JCD|1|A|U|2779
3JCD|1|A|G|2780
3JCD|1|A|A|2781
3JCD|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13