3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
3JCD|1|a|A|532, 3JCD|1|a|U|534, 3JCD|1|a|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCD_132 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1843
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

3JCD|1|a|G|515
3JCD|1|a|U|516
3JCD|1|a|G|517
3JCD|1|a|C|518
3JCD|1|a|C|519
3JCD|1|a|A|520
3JCD|1|a|G|521
*
3JCD|1|a|C|528
3JCD|1|a|G|529
3JCD|1|a|G|530
3JCD|1|a|U|531
3JCD|1|a|A|532
3JCD|1|a|A|533
3JCD|1|a|U|534
3JCD|1|a|A|535
3JCD|1|a|C|536

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain 7
mRNA
Chain c
30S ribosomal protein S3
Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12

Coloring options:


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