IL_3JCD_157

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

3JCD|1|a|A|1257, 3JCD|1|a|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCD_157 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2758

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

3JCD|1|a|G|1255
3JCD|1|a|A|1256
3JCD|1|a|A|1257
3JCD|1|a|G|1258
*
3JCD|1|a|C|1277
3JCD|1|a|G|1278
3JCD|1|a|G|1279
3JCD|1|a|A|1280
3JCD|1|a|C|1281
3JCD|1|a|C|1282

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14