IL_3JCE_008

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_008 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1119

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3JCE|1|A|C|239
3JCE|1|A|C|240
3JCE|1|A|A|241
3JCE|1|A|G|242
3JCE|1|A|U|243
3JCE|1|A|A|244
3JCE|1|A|G|245
*
3JCE|1|A|C|253
3JCE|1|A|G|254
3JCE|1|A|A|255
3JCE|1|A|A|256
3JCE|1|A|C|257
3JCE|1|A|G|258

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15