IL_3JCE_031

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_031 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1146

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

3JCE|1|A|U|1004
3JCE|1|A|C|1005
3JCE|1|A|C|1006
3JCE|1|A|C|1007
3JCE|1|A|A|1008
3JCE|1|A|A|1009
3JCE|1|A|A|1010
3JCE|1|A|G|1011
*
3JCE|1|A|C|1150
3JCE|1|A|A|1151

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20