IL_3JCE_050

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

3JCE|1|A|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_050 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1178

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

3JCE|1|A|G|1432
3JCE|1|A|A|1433
3JCE|1|A|A|1434
3JCE|1|A|G|1435
*
3JCE|1|A|C|1557
3JCE|1|A|C|1558
3JCE|1|A|U|1559
3JCE|1|A|G|1560
3JCE|1|A|C|1561

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2