IL_3JCE_054

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_054 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2257

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JCE|1|A|U|1474
3JCE|1|A|G|1475
3JCE|1|A|U|1476
3JCE|1|A|A|1477
3JCE|1|A|G|1478
*
3JCE|1|A|U|1513
3JCE|1|A|G|1514
3JCE|1|A|A|1515
3JCE|1|A|G|1516
3JCE|1|A|G|1517

Current chains

Chain A

23 ribosomal RNA

Nearby chains