3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGAGG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCE_064 not in the Motif Atlas
Homologous match to IL_5J7L_310
Geometric discrepancy: 0.1598
The information below is about IL_5J7L_310
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

3JCE|1|A|U|1720
3JCE|1|A|G|1721
3JCE|1|A|A|1722
3JCE|1|A|G|1723
3JCE|1|A|G|1724
*
3JCE|1|A|U|1736
3JCE|1|A|G|1737
3JCE|1|A|G|1738
3JCE|1|A|A|1739
3JCE|1|A|G|1740

Current chains

Chain A
23 ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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