IL_3JCE_070

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

3JCE|1|A|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_070 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.2166

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3JCE|1|A|G|1846
3JCE|1|A|A|1847
3JCE|1|A|A|1848
3JCE|1|A|G|1849
*
3JCE|1|A|C|1893
3JCE|1|A|C|1894

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 9

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA