IL_3JCE_097

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_097 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1091

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3JCE|1|A|C|2652
3JCE|1|A|U|2653
3JCE|1|A|A|2654
3JCE|1|A|G|2655
3JCE|1|A|U|2656
3JCE|1|A|A|2657
3JCE|1|A|C|2658
*
3JCE|1|A|G|2663
3JCE|1|A|G|2664
3JCE|1|A|A|2665
3JCE|1|A|C|2666
3JCE|1|A|C|2667
3JCE|1|A|G|2668

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain x

Elongation factor 4