IL_3JCE_121

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3JCE|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_121 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1576

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

3JCE|1|a|G|147
3JCE|1|a|G|148
3JCE|1|a|A|149
3JCE|1|a|U|150
3JCE|1|a|A|151
3JCE|1|a|A|152
3JCE|1|a|C|153
*
3JCE|1|a|G|168
3JCE|1|a|C|169
3JCE|1|a|U|170
3JCE|1|a|A|171
3JCE|1|a|A|172
3JCE|1|a|U|173
3JCE|1|a|A|174
3JCE|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20