3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCE_147 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.0983
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

3JCE|1|a|G|887
3JCE|1|a|G|888
3JCE|1|a|A|889
3JCE|1|a|G|890
3JCE|1|a|U|891
3JCE|1|a|A|892
3JCE|1|a|C|893
3JCE|1|a|G|894
*
3JCE|1|a|U|905
3JCE|1|a|A|906
3JCE|1|a|A|907
3JCE|1|a|A|908
3JCE|1|a|A|909
3JCE|1|a|C|910

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12

Coloring options:


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