3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
3JCE|1|a|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCE_150 not in the Motif Atlas
Homologous match to IL_5J7L_041
Geometric discrepancy: 0.1232
The information below is about IL_5J7L_041
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

3JCE|1|a|G|933
3JCE|1|a|C|934
3JCE|1|a|A|935
*
3JCE|1|a|U|1380
3JCE|1|a|U|1381
3JCE|1|a|C|1382
3JCE|1|a|C|1383
3JCE|1|a|C|1384

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain 9
Transfer RNA; tRNA
Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9

Coloring options:


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