IL_3JCE_150

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

3JCE|1|a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_150 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1232

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

3JCE|1|a|G|933
3JCE|1|a|C|934
3JCE|1|a|A|935
*
3JCE|1|a|U|1380
3JCE|1|a|U|1381
3JCE|1|a|C|1382
3JCE|1|a|C|1383
3JCE|1|a|C|1384

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain 9

Transfer RNA; tRNA

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9