IL_3JCE_160

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

3JCE|1|a|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_160 not in the Motif Atlas

Homologous match to IL_4LFB_050

Geometric discrepancy: 0.1495

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3JCE|1|a|C|1158
3JCE|1|a|U|1159
3JCE|1|a|G|1160
3JCE|1|a|C|1161
*
3JCE|1|a|G|1175
3JCE|1|a|A|1176
3JCE|1|a|G|1177
3JCE|1|a|G|1178
3JCE|1|a|A|1179
3JCE|1|a|A|1180
3JCE|1|a|G|1181

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain i

30S ribosomal protein S9