3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JCE_186 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.0819
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

3JCE|1|A|U|1851
3JCE|1|A|U|1852
3JCE|1|A|A|1853
3JCE|1|A|A|1854
3JCE|1|A|U|1855
3JCE|1|A|U|1856
3JCE|1|A|G|1857
3JCE|1|A|A|1858
3JCE|1|A|U|1859
3JCE|1|A|G|1860
*
3JCE|1|A|U|1882
3JCE|1|A|U|1883
3JCE|1|A|G|1884
3JCE|1|A|A|1885
3JCE|1|A|U|1886
3JCE|1|A|C|1887
3JCE|1|A|G|1888
3JCE|1|A|A|1889
3JCE|1|A|A|1890
3JCE|1|A|G|1891

Current chains

Chain A
23 ribosomal RNA

Nearby chains

Chain 5
50S ribosomal protein L1
Chain 9
Transfer RNA; tRNA

Coloring options:


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