IL_3JCJ_012

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_012 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.144

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3JCJ|1|A|C|239
3JCJ|1|A|C|240
3JCJ|1|A|A|241
3JCJ|1|A|G|242
3JCJ|1|A|U|243
3JCJ|1|A|A|244
3JCJ|1|A|G|245
*
3JCJ|1|A|C|253
3JCJ|1|A|G|254
3JCJ|1|A|A|255
3JCJ|1|A|A|256
3JCJ|1|A|C|257
3JCJ|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15

Chain c

50S ribosomal protein L35