IL_3JCJ_026

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

3JCJ|1|A|G|776, 3JCJ|1|A|A|788, 3JCJ|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_026 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.1651

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

3JCJ|1|A|G|775
3JCJ|1|A|G|776
3JCJ|1|A|G|777
*
3JCJ|1|A|C|787
3JCJ|1|A|A|788
3JCJ|1|A|A|789
3JCJ|1|A|U|790
3JCJ|1|A|C|791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain R

50S ribosomal protein L22

Chain b

50S ribosomal protein L34