IL_3JCJ_102

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

3JCJ|1|A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_102 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1358

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3JCJ|1|A|G|2737
3JCJ|1|A|A|2738
3JCJ|1|A|U|2739
3JCJ|1|A|A|2740
3JCJ|1|A|A|2741
3JCJ|1|A|G|2742
*
3JCJ|1|A|C|2762
3JCJ|1|A|G|2763
3JCJ|1|A|A|2764
3JCJ|1|A|A|2765
3JCJ|1|A|A|2766
3JCJ|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain I

50S ribosomal protein L13

Chain d

50S ribosomal protein L36