IL_3JCJ_120

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3JCJ|1|g|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_120 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1473

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

3JCJ|1|g|G|147
3JCJ|1|g|G|148
3JCJ|1|g|A|149
3JCJ|1|g|U|150
3JCJ|1|g|A|151
3JCJ|1|g|A|152
3JCJ|1|g|C|153
*
3JCJ|1|g|G|168
3JCJ|1|g|C|169
3JCJ|1|g|U|170
3JCJ|1|g|A|171
3JCJ|1|g|A|172
3JCJ|1|g|U|173
3JCJ|1|g|A|174
3JCJ|1|g|C|175

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20