IL_3JCJ_121

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

3JCJ|1|g|U|244, 3JCJ|1|g|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_121 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1175

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

3JCJ|1|g|G|242
3JCJ|1|g|A|243
3JCJ|1|g|U|244
3JCJ|1|g|U|245
3JCJ|1|g|A|246
3JCJ|1|g|G|247
*
3JCJ|1|g|C|277
3JCJ|1|g|G|278
3JCJ|1|g|A|279
3JCJ|1|g|C|280
3JCJ|1|g|G|281
3JCJ|1|g|A|282
3JCJ|1|g|U|283
3JCJ|1|g|C|284

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S12

Chain x

30S ribosomal protein S17